User’s Guide

• Tutorial
  • A Minimal Workflow
  • Running Your First Workflow
  • Setting the Default Verbosity
  • Debugging a Workflow
  • Defining Targets with Dependencies
  • Named Inputs and Outputs
  • Specifying Target Resources
  • Observing Target Execution
  • What Happens When a Target Fails?
  • Reusable Targets with Templates
  • Viewing Logs
  • Cleaning Up
  • Protecting Files From Being Cleaned Up
  • A Note About Reproducibility
• Mapping over Inputs
  • Naming Targets Differently
  • Passing Multiple Arguments to a Template Function
  • Chaining Maps
  • Collecting Files
• Configuration
  • Commands for Configuration
  • Available Settings
• Tips and Tricks
  • Iterating Over a Parameter Space
  • Dynamically Generating a Workflow
  • External Configuration of Workflows
  • Large Workflows